Jumpcode Genomics and TGen collaborate on genomic sequencing of SARS-CoV-2

Jumpcode Genomics, a genome expertise platform firm centered on enhancing the understanding of human biology, introduced at the moment a collaboration with the Translational Genomics Analysis Institute (TGen), an affiliate of Metropolis of Hope, to assist investigations into the genomic epidemiology of SARS-CoV-2, the virus that causes COVID-19. Jumpcode Genomics and TGen are validating novel complete options and scientific companies that leverage meta-genomic sequencing and evaluation to facilitate detection of COVID-19 and different infectious ailments; all made very environment friendly by way of using the Jumpcode Genomics CRISPRclean™ expertise.

COVID-19 has led to greater than 660,000 deaths within the U.S., and instances attributable to new variants are steadily on the rise. Diagnosing SARS-CoV-2 an infection, assessing affected person danger for COVID sickness, and monitoring the quantity and supply of infections inside a neighborhood is necessary for mitigating and stopping new COVID-19 instances however difficult to do precisely and effectively. Whereas a nationwide surveillance program to gather COVID-19 case information from state, native, and territorial well being departments is ongoing, the instances reported to the Facilities for Illness Management and Prevention underestimate the precise variety of infections attributable to asymptomatic and gentle instances that don’t get examined.

Genomic sequencing of SARS-CoV-2 can play an important function in diagnosing an infection, figuring out new variants of the virus and associated viruses, and monitoring the unfold of current strains, in addition to informing public well being efforts to forestall future infectious illness outbreaks. Utilizing Jumpcode’s CRISPRclean expertise for enhancing metagenomic sequencing, we’re in a position to not solely detect a SARS-CoV-2 an infection, but in addition any co-infections, and/or related human host responses to an infection.”


Nicholas Schork, Ph.D., TGen Distinguished Professor and Director of TGen’s Quantitative Medication and Techniques Biology Division

Jumpcode combines CRISPR-based expertise with next-generation sequencing to take away undesirable sequences, thereby growing sensitivity and enabling extra environment friendly and cost-effective sequencing. This strategy empowers scientists to acquire higher information, extract extra related details about the character of an an infection, and in the end determine distinctive elements of an an infection that might have in any other case been undetected. TGen is testing the potential of Jumpcode’s CRISPRclean-mediated depletion reagents together with Dr. Schork’s laboratory’s applied sciences, together with protocols for conducting a diagnostic assay utilizing the CRISPRclean reagents and algorithms for analyzing the ensuing metagenomic sequence information. Expanded potential scientific and epidemiological research are deliberate to show the diagnostic assay’s utility in routine affected person testing for infectious ailments.

Elements of the strategy taken by Jumpcode and TGen have been just lately validated utilizing a set of reference samples through which the an infection standing and severity of the an infection have been identified. Now, TGen researchers are finding out COVID-19 samples beforehand evaluated by PCR checks to evaluate the sensitivity and specificity of the metagenomic diagnostic towards commonplace centered PCR-based testing. TGen researchers have additionally been in a position to determine attainable co-infections in people discovered to have a SARS-CoV-2 an infection as nicely.

“The COVID-19 pandemic has impacted all of our lives in unprecedented methods. But there’s nonetheless a lot to be realized concerning the level of an infection and the way it spreads,” mentioned Yaron Hakak, Ph.D., CEO of Jumpcode Genomics. “TGen scientists have been main among the most progressive analysis into COVID-19 testing, prognosis, and remedy. As well as, TGen is accountable for almost all of state sequencing testing in Arizona, and we’re proud to collaborate with them on this metagenomic undertaking. The information gained from these efforts could assist public well being professionals mitigate the impression of recent strains of COVID-19 and put together for future pandemics.”

Supply:

Translational Genomics Analysis Institute (TGen)

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